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Thanks, Jay. I scanned for viruses with Norton and Kaspersky, but both turned up nothing. Our more talented IT guy returned the next day and gave this information.
"Both script errors referred to html files. In looking at the html code I noticed a line making a java call to an unusual URL at the bottom of the file. The date modified stamp on the file was 12/27/2007.... the day of our virus outbreak. I simply removed the line and saved the file. What I can't explain is why it started happening now. No other hint of a virus."